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Anal Fissures and Fistulas

An anal fissure and an anal fistula might sound similar because of their names. Although both affect the area around the anus, they are distinct conditions with different causes, symptoms and treatments.

If you or someone you care about has symptoms in this area, how can you tell whether it’s a fissure or a fistula? At Banner Health, our experts carefully evaluate your condition and create personalized treatment plans to reduce pain, promote healing and prevent complications. 

What is an anal fissure?

An anal fissure is a small tear or crack in the lining of the anus. Anal fissures are common and may be acute (short-term) or chronic (lasting longer than six weeks).

Fissures are most often caused by:

  • Constipation or straining: Passing hard stools (poop) can stretch the skin and cause a tear
  • Diarrhea: Frequent loose stools can irritate the lining
  • Childbirth: Pressure during delivery can cause small tears
  • Inflammatory bowel disease (IBD): Conditions such as Crohn’s disease or colitis increase your risk

Even a small tear can cause sharp pain, burning or itching, especially during a bowel movement. You may notice a small amount of bright red blood on the toilet paper when you wipe.

What is an anal fistula?

An anal fistula is a small tunnel that forms between the inside of the anus or rectum and the skin outside the anus. Fistulas can develop between the anus and the skin, the anus and the vagina or the skin and part of the intestine.

Most anal fistulas develop after an abscess. An abscess is a pocket of infection that does not fully heal. When the abscess drains, it can leave a tunnel behind. Other causes may include:

Symptoms may include:

  • Pain or swelling near the anus
  • Pus or blood-tinged drainage 
  • Skin irritation
  • Fever if infection spreads

Learn more about different types of fistulas.

Differences between fissures and fistulas

Here is a quick guide to help distinguish between the two conditions.

Anal fissure:

  • Cause: Skin tear from stretching or trauma
  • Pain: Sharp pain, especially during bowel movements
  • Discharge: Rare
  • Healing: Often heals with home care 

Anal fistula:

  • Cause: Tunnel from infection or abscess
  • Pain: Constant or intermittent
  • Discharge: Common (pus or blood)
  • Healing: Usually requires surgery

How anal fissures and fistulas are diagnosed

Your health care provider will use a combination of your medical history, a physical exam and sometimes imaging tests to make a diagnosis.

Medical history

Your provider may ask about:

  • Pain when you poop
  • Bleeding or drainage
  • Swelling or lumps
  • Chronic constipation or diarrhea
  • Past infections or surgeries

Physical exam

A close look at the anal area can identify tears, openings or swelling. If a fistula is suspected, your provider will check for the external opening and signs of infection. 

Imaging and tests

Sometimes additional tests are needed, including:

Getting an accurate diagnosis will help guide your treatment plan.

Treatment options for anal fissures and fistulas

Treatment depends on the condition and its severity.

Treating anal fissures

Many fissures heal with non-surgical care:

  • Diet and hydration: High-fiber foods and fluids help soften stools
  • Sitz baths: Warm water soothes the area and helps with healing
  • Topical medications: Nitroglycerin ointment or calcium channel blockers relax the anal muscles
  • Stool softeners and laxatives: Reduce straining

If a fissure does not heal, additional options include:

  • Botox injections: Botox is injected to relax the muscle, giving the fissure time to heal.
  • Surgical repair: Lateral internal sphincterotomy is a minor procedure for chronic (repetitive) fissures. It gently relaxes the anal muscle, improves blood flow and supports healing. 

Treating anal fistulas

Anal fistulas usually require surgery performed by a colorectal surgeon. The type of procedure depends on the location and depth of the fistula. If your fistula is caused by IBS and isn’t infected, your surgeon might try medicine that helps your immune system (immunomodulators) before doing surgery. 

Surgical options include:

  • Fistulotomy: This procedure opens the tunnel to allow healing from the inside out. It is usually an outpatient procedure. This means you go home the same day.
  • Seton placement: This procedure puts a small thread or rubber drain (called a seton) inside the tunnel to keep the fistula open. This helps the fistula drain and heal. You might have one or more setons, depending on the size and location of your fistula.
  • Advancement flap procedures: Also known as the endorectal advancement flap, this procedure involves creating a small tissue flap from the anus or lower rectum. This tissue covers the inside opening of the fistula, helping it close. It also protects the muscles around it.
  • Fibrin glue or collagen plug: Fibrin glue, made from plasma protein, can be used to seal and help heal a fistula. A collagen plug can also be inserted to close the tunnel. Both are injected after cleaning out the tract and sewing shut the inside opening.
  • Ligation of intersphincteric fistula track (LIFT): This procedure closes the opening between the anal canal and the skin without harming the sphincter muscle. 

Managing discomfort at home

Recovery may take several weeks to a few months. During healing, you can reduce discomfort by:

  • Taking warm sitz baths daily
  • Using soft, non-irritating toilet paper
  • Keeping the area clean and dry
  • Avoiding straining during bowel movements
  • Applying prescribed creams or ointments

These practices can support healing and reduce inflammation.

When to seek medical care

Contact your health care provider if you have:

  • Ongoing rectal pain
  • Bleeding
  • Swelling or drainage 
  • Symptoms that do not improve

Early evaluation can prevent complications.

What happens if anal fissures and fistulas are not treated? 

Without treatment, symptoms may worsen. Untreated anal fissures can become chronic. Pain may continue and healing becomes more difficult. Chronic fissures often require medication or minor surgery.

Untreated anal fissures rarely heal on their own. Infection can return, abscesses might form again and drainage can continue. Delaying treatment may lead to a more complex condition that requires more advanced surgery. 

Frequently asked questions

Is anal fissure or fistula surgery painful?

Some discomfort is normal after surgery but pain improves as you heal. Your health care provider will give you medication and care instructions.

Will fistula surgery affect bowel control?

Colorectal surgeons use techniques designed to protect the muscles that control bowel movements. 

Can anal fissures and fistulas come back?

Yes, both conditions can return, especially if constipation, infection or IBD is not controlled. Follow-up care reduces the risk of returning fissures or fistulas.

Can I prevent anal fissures or fistulas?

You can reduce your risk by eating plenty of fiber, drinking plenty of water, avoiding straining when you have a bowel movement and treating infections early.

Why choose Banner Health

At Banner Health, our colorectal specialists provide expert diagnosis and advanced treatment for anal fissures and anal fistulas. We use evidence-based techniques and personalized care plans to reduce pain, support healing and improve long-term outcomes.

If you are experiencing symptoms, schedule an appointment with a Banner Health specialist.